Recent developments in the CCP-EM software suite

نویسندگان

  • Tom Burnley
  • Colin M. Palmer
  • Martyn Winn
چکیده

As part of its remit to provide computational support to the cryo-EM community, the Collaborative Computational Project for Electron cryo-Microscopy (CCP-EM) has produced a software framework which enables easy access to a range of programs and utilities. The resulting software suite incorporates contributions from different collaborators by encapsulating them in Python task wrappers, which are then made accessible via a user-friendly graphical user interface as well as a command-line interface suitable for scripting. The framework includes tools for project and data management. An overview of the design of the framework is given, together with a survey of the functionality at different levels. The current CCP-EM suite has particular strength in the building and refinement of atomic models into cryo-EM reconstructions, which is described in detail.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

(International Tables for Crystallography Volume F, 2010, in press) Four-Dimensional Cryo Electron Microscopy at Quasi Atomic Resolution: "IMAGIC 4D"

The traditional tools of the structural biologist seeking to understand macro-molecules and their complexes are X-ray crystallography and NMR spectroscopy. Singleparticle cryo electron microscopy (“cryo-EM”) has established itself as a new structural biology technique over the last 15 years. Spectacular insights into the functioning of macromolecular complexes have been achieved especially from...

متن کامل

PET vs. SPECT: in the context of ongoing developments

This paper intends to compare the abilities of the two major imaging modalities in nuclear medicine imaging: Positron Emission Tomography (PET) and Single Photon Emission Computed Tomography (SPECT). The motivations are many-fold: (i) To gain a better understanding of the strengths and limitations of the two imaging modalities in the context of recent and ongoing developments in hardware ...

متن کامل

Recent Developments in Discrete Event Systems

This article is a brief exposure of the process approach to a newly emerging area called "discrete event systems" in control theory and summarizes some of the recent developments in this area. Discrete event systems is an area of research that is developing within the interstices of computer, control and communication sciences. The basic direction of research addresses issues in the analysis an...

متن کامل

A CAD System Framework for the Automatic Diagnosis and Annotation of Histological and Bone Marrow Images

Due to ever increasing of medical images data in the world’s medical centers and recent developments in hardware and technology of medical imaging, necessity of medical data software analysis is needed. Equipping medical science with intelligent tools in diagnosis and treatment of illnesses has resulted in reduction of physicians’ errors and physical and financial damages. In this article we pr...

متن کامل

Correlation between anti-nuclear antibodies (ANA), rheumatoid factor (RF), anti-cyclic citrullinated peptides antibodies (Anti-CCP) and percentage and type of pulmonary involvement in patients with rheumatoid arthritis, Booali Hospital Tehran (2016-2

Background: Controlling the pulmonary involvement, as one of the most common extra-articular consequences in rheumatoid arthritis (RA), can improve the life quality and survival rate of patients. This study aimed to evaluate the correlation between disease-related inflammatory factors and the severity and type of lung involvement in patients, which is a practical step toward early detection and...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره 73  شماره 

صفحات  -

تاریخ انتشار 2017